PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF048900180CFD_t1
Common NameTRAES_3BF048900180CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 741aa    MW: 84709 Da    PI: 7.034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF048900180CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-1612107299
                              EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                              fkvl     ++ +rl +p++f+  +       g++ ++++ +l+ ++g++W v+l  +k ++ ++lt+GW +Fv +n L+e +f++
  TRAES3BF048900180CFD_t1  12 FKVL--VGDFA-RRLEIPRDFLG-YipevglRGSNISPVQAMLKRPEGKTWVVEL--EKVDRCVFLTTGWPKFVVDNSLREYEFLL 91 
                              5555..33444.4699*****95.559999955557999****************..999999*********************** PP

                              EEE-SSSEE..EEEEE-S CS
                       B3  82 Fkldgrsefelvvkvfrk 99 
                              F++d++++f  +v++f +
  TRAES3BF048900180CFD_t1  92 FRHDKKMDF--MVSIFGR 107
                              **9999999..***9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-194110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-217114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8168108IPR003340B3 DNA binding domain
CDDcd100174.39E-169105No hitNo description
SMARTSM010191.9E-1711108IPR003340B3 DNA binding domain
PfamPF023623.4E-1313107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MEEDEEGRPR FFKVLVGDFA RRLEIPRDFL GYIPEVGLRG SNISPVQAML KRPEGKTWVV  60
ELEKVDRCVF LTTGWPKFVV DNSLREYEFL LFRHDKKMDF MVSIFGRNAC EKAVRSSGSA  120
TESLERILPT CKRGHSGDEL TKTTNNLRQS HSLVMVPDQS DTKIFPFQGS TQGNGHISPQ  180
SFADIHLHEV DGLKDELKIY LLLKVPMDDD KAKVIAEVMS RLHVDRATVD LFCATLCLYK  240
WDSDAAAEVL NTCRGKPQIP NQFLKQKLVL QLDFIKRELR HFFPTGDDCP PQICDSRESS  300
LEEPNLSTQA LQIYLPAVKS KLVDDHELCD LSYKQKRRIV KSRSQQISET PRRSPRLAHL  360
KNSGGSIDSG LKEKPEVLES SPSSRIDQVE HRAGHACLLY EKPEHVLKGD RQHAIGSLSQ  420
DFKRLKRTRG EVSLSKKPQH NQENEEKIDQ GNNGEIFEEQ VDRNAAESSE LFMGRDWIDS  480
SPPTKSKLSS MIINELSLTW KPSVHTNSLE TVLLHIQRDN FMKTITHVQG IICSSPSDLH  540
CAAIIEAVVQ KEILKWDSCL QDVDAQRVVI ALLEHAKKIK EIHNFNMESR KEEFSTKLQD  600
QLKWQLKELE SACTSLEFDY KKVTCDGNIA VSTSQEQKKK LHALQDEIKG LQQSMMMEDE  660
IQKLVHQVAE HESLVQKSLM ERVRVKTVLK SYKQVLAEVK ERLASDELRL IDVDALVKVE  720
MDNLRKEIEI SKGRLLNIIF K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232255.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like isoform X1
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A077RV160.0A0A077RV16_WHEAT; Uncharacterized protein
STRINGMLOC_5109.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-14B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]